Study programmes
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| Faculty | Study type | Name of the study program | Language of instruction | Study form | ||
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Mathematical Structures | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computational Mathematics | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Physics of Condensed Matter and Materials | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Software and Data Engineering | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Mathematical Analysis | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Biophysics and Chemical Physics | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Theoretical Physics | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Atmospheric Physics, Meteorology and Climatology | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Language Technologies and Computational Linguistics | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Surface and Plasma Physics | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Artificial Intelligence | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Financial and Insurance Mathematics | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Mathematical and Computational Modelling in Physics | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Optics and Optoelectronics | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Geophysics and Planetary Science | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Probability, Mathematical Statistics and Econometrics | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Theoretical Computer Science | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Astronomy and Astrophysics | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Particle and Nuclear Physics | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Mathematical Modelling in Physics and Technology | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Mathematical Structures | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Mathematics for Information Technologies | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Visual Computing and Game Development | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Discrete Models and Algorithms | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Software Systems | English | full-time |
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| Faculty of Education | Bachelor's | Special Education | Czech | combined |
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| Faculty of Education | Bachelor's | Education towards Health for Teacher Education | Czech | combined |
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| Faculty of Education | Bachelor's | Special Education for Teacher Education | Czech | combined |
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| Faculty of Education | Bachelor's | Chemistry for Teacher Education | Czech | combined |
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| Faculty of Education | Bachelor's | Teacher Training for Nursery Schools | Czech | combined |
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| Faculty of Education | Bachelor's | Education | Czech | combined |
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| Faculty of Education | Bachelor's | Biology, Geology and Environmental Studies for Teacher Education | Czech | combined |
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| Faculty of Education | Bachelor's | Mathematics for Teacher Education | Czech | combined |
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| Faculty of Education | Bachelor's | Special Education/Speech Therapy | Czech | combined |
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| Faculty of Education | Bachelor's | Teacher Training in Vocational Education and Training | Czech | combined |
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| Faculty of Education | Bachelor's | Information and Communication Technology for Teacher Education | Czech | combined |
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| Faculty of Education | Bachelor's | School Management | Czech | combined |
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| Faculty of Education | Bachelor's | Out-of-school upbringing | Czech | combined |
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| Faculty of Education | Bachelor's | Czech Language for Teacher Education | Czech | full-time |
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| Faculty of Education | Bachelor's | Art Education for Teacher Education | Czech | full-time |
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| Faculty of Education | Bachelor's | Physical Education for Teacher Education | Czech | full-time |
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| Faculty of Education | Bachelor's | German Language for Teacher Education | Czech | full-time |
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| Faculty of Education | Bachelor's | Choral Singing for Teacher Education | Czech | full-time |
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| Faculty of Education | Bachelor's | Special Education for Teacher Education | Czech | full-time |
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| Faculty of Education | Bachelor's | Biology, Geology and Environmental Studies for Teacher Education | Czech | full-time |
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| Faculty of Education | Bachelor's | Teacher Training for Nursery Schools | Czech | full-time |
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| Faculty of Education | Bachelor's | Chemistry for Teacher Education | Czech | full-time |
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| Faculty of Education | Bachelor's | Special Education/Speech Therapy | Czech | full-time |
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| Faculty of Education | Bachelor's | Education towards Health for Teacher Education | Czech | full-time |
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| Faculty of Education | Bachelor's | Music Education for Teacher Education | Czech | full-time |
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