Study programmes
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| Faculty | Study type | Name of the study program | Language of instruction | Study form | ||
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| Faculty of Mathematics and Physics | doctoral | Computer Science - Software Systems | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Atmospheric physics, meteorology and climatology | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Physics of nanostructures and nanomaterials | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Quantum Optics and Optoelectronics | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Computational linguistics | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Computer Science - Visual computing and computer games | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Physics of the Earth and Planets | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Physics of Plasmas and Ionized Media | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Computer Science - Theory of Computing, Discrete Models and Optimization | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Probability and statistics, econometrics and financial mathematics | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Physics of Condensed Matter and Materials Research | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Biophysics, Chemical and Macromolecular Physics | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Algebra, number theory, and mathematical logic | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Geometry, topology, and global analysis | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Mathematical and computer modeling | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Computational mathematics | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Particle and Nuclear Physics | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Theoretical Physics, Astronomy and Astrophysics | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Physics of Surfaces and Interfaces | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Mathematical analysis | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | General Questions of Mathematics and Computer Science | English | full-time |
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| Faculty of Mathematics and Physics | doctoral | Physics Education and General Problems of Physics | English | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Geophysics and Planetary Science | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Discrete Models and Algorithms | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Artificial Intelligence | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Teacher Education of Computer Science for Upper Secondary Schools | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Mathematics for Information Technologies | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Visual Computing and Game Development | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Teacher Education of Physics for Upper Secondary Schools | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Astronomy and Astrophysics | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Surface and Plasma Physics | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Atmospheric Physics, Meteorology and Climatology | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Language Technologies and Computational Linguistics | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Teacher Education of Mathematics for Upper Secondary Schools | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Physics of Condensed Matter and Materials | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Mathematical and Computational Modelling in Physics | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Biophysics and Chemical Physics | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Teacher Education of Descriptive Geometry for Upper Secondary Schools | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Theoretical Physics | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Probability, Mathematical Statistics and Econometrics | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Bioinformatics | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Theoretical Computer Science | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Mathematical Modelling in Physics and Technology | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computational Mathematics | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Mathematical Analysis | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Software and Data Engineering | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Particle and Nuclear Physics | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Computer Science - Software Systems | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Financial and Insurance Mathematics | Czech | full-time |
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| Faculty of Mathematics and Physics | Master's (post-Bachelor) | Mathematical Structures | Czech | full-time |
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