Study programmes
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| Faculty | Study type | Name of the study program | Language of instruction | Study form | ||
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| Faculty of Science | Bachelor's | Science | English | full-time |
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| Faculty of Science | doctoral | Molecular and Cellular Biology, Genetics and Virology | Czech | combined |
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| Faculty of Science | doctoral | Ecology | Czech | combined |
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| Faculty of Science | doctoral | Immunology | Czech | combined |
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| Faculty of Science | doctoral | Theoretical and Evolutionary Biology | Czech | combined |
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| Faculty of Science | doctoral | Inorganic Chemistry | Czech | combined |
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| Faculty of Science | doctoral | Physical Geography and Geoecology | Czech | combined |
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| Faculty of Science | doctoral | Anthropology and Human Genetics | Czech | combined |
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| Faculty of Science | doctoral | Regional and Political Geography | Czech | combined |
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| Faculty of Science | doctoral | Demography | Czech | combined |
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| Faculty of Science | doctoral | Philosophy and History of Science | Czech | combined |
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| Faculty of Science | doctoral | Environmental Science | Czech | combined |
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| Faculty of Science | doctoral | Zoology | Czech | combined |
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| Faculty of Science | doctoral | Microbiology | Czech | combined |
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| Faculty of Science | doctoral | Organic Chemistry | Czech | combined |
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| Faculty of Science | doctoral | General Geography | Czech | combined |
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| Faculty of Science | doctoral | Animal Physiology | Czech | combined |
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| Faculty of Science | doctoral | Physical Chemistry | Czech | combined |
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| Faculty of Science | doctoral | Analytical Chemistry | Czech | combined |
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| Faculty of Science | doctoral | Didactics in Integrated Science | Czech | combined |
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| Faculty of Science | doctoral | Bioinformatics and computational biology | Czech | combined |
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| Faculty of Science | doctoral | Modelling of Chemical Properties on Nano- and Biostructures | Czech | combined |
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| Faculty of Science | doctoral | Macromolecular Chemistry | Czech | combined |
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| Faculty of Science | doctoral | Developmental and Cell Biology | Czech | combined |
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| Faculty of Science | doctoral | Geology | Czech | combined |
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| Faculty of Science | doctoral | Applied Geology | Czech | combined |
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| Faculty of Science | doctoral | Parasitology | Czech | combined |
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| Faculty of Science | doctoral | Didactics of Chemistry | Czech | combined |
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| Faculty of Science | doctoral | Biochemistry | Czech | combined |
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| Faculty of Science | doctoral | Didactics of Geography | Czech | combined |
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| Faculty of Science | doctoral | Botany | Czech | combined |
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| Faculty of Science | doctoral | Geoinformatics, Cartography and Remote Sensing | Czech | combined |
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| Faculty of Science | doctoral | Social Geography and Regional Development | Czech | combined |
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| Faculty of Science | doctoral | Experimental Plant Biology | Czech | combined |
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| Faculty of Science | doctoral | Inorganic Chemistry | English | combined |
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| Faculty of Science | doctoral | Macromolecular Chemistry | English | combined |
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| Faculty of Science | doctoral | Developmental and Cell Biology | English | combined |
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| Faculty of Science | doctoral | Theoretical and Evolutionary Biology | English | combined |
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| Faculty of Science | doctoral | Philosophy and History of Science | English | combined |
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| Faculty of Science | doctoral | Anthropology and Human Genetics | English | combined |
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| Faculty of Science | doctoral | Social Geography and Regional Development | English | combined |
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| Faculty of Science | doctoral | Parasitology | English | combined |
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| Faculty of Science | doctoral | Modelling of Chemical Properties on Nano- and Biostructures | English | combined |
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| Faculty of Science | doctoral | Molecular and Cellular Biology, Genetics and Virology | English | combined |
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| Faculty of Science | doctoral | Animal Physiology | English | combined |
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| Faculty of Science | doctoral | Microbiology | English | combined |
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| Faculty of Science | doctoral | Applied Geology | English | combined |
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| Faculty of Science | doctoral | Bioinformatics and computational biology | English | combined |
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| Faculty of Science | doctoral | Botany | English | combined |
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| Faculty of Science | doctoral | Immunology | English | combined |
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