Study programmes
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| Faculty | Study type | Name of the study program | Language of instruction | Study form | ||
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| Second Faculty of Medicine | doctoral | Neurosciences | Czech | full-time |
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| Second Faculty of Medicine | doctoral | Human Physiology and Pathophysiology | Czech | full-time |
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| Second Faculty of Medicine | doctoral | Anatomy, Histology and Embryology | English | full-time |
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| Second Faculty of Medicine | doctoral | Biomedical Informatics | English | full-time |
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| Second Faculty of Medicine | doctoral | Gynaecology, Obstetrics and Pediatrics | English | full-time |
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| Second Faculty of Medicine | doctoral | Experimental intensive care medicine | English | full-time |
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| Second Faculty of Medicine | doctoral | Imaging Methods in Medicine | English | full-time |
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| Second Faculty of Medicine | doctoral | Neurosciences | English | full-time |
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| Second Faculty of Medicine | doctoral | Nutritional and Metabolic Sciences | English | full-time |
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| Second Faculty of Medicine | doctoral | Cell Biology and Pathology | English | full-time |
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| Second Faculty of Medicine | doctoral | Pharmacology and Toxicology | English | full-time |
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| Second Faculty of Medicine | doctoral | Microbiology | English | full-time |
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| Second Faculty of Medicine | doctoral | Preventive Medicine and Epidemiology | English | full-time |
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| Second Faculty of Medicine | doctoral | Human Physiology and Pathophysiology | English | full-time |
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| Second Faculty of Medicine | doctoral | Molecular and Cellular Biology, Genetics and Virology | English | full-time |
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| Second Faculty of Medicine | doctoral | Medical Psychology and Psychopathology | English | full-time |
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| Second Faculty of Medicine | doctoral | Kinesiology and Rehabilitation | English | full-time |
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| Second Faculty of Medicine | doctoral | Experimental and Clinical Oncology | English | full-time |
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| Second Faculty of Medicine | doctoral | Experimental Surgery | English | full-time |
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| Second Faculty of Medicine | doctoral | Medical Biophysics | English | full-time |
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| Second Faculty of Medicine | doctoral | Cardiovascular Science | English | full-time |
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| Second Faculty of Medicine | doctoral | Biochemistry and Pathobiochemistry | English | full-time |
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| Second Faculty of Medicine | doctoral | Immunology | English | full-time |
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| Second Faculty of Medicine | Master's | General Medicine | Czech | full-time |
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| Second Faculty of Medicine | Master's | General Medicine | English | full-time |
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| Second Faculty of Medicine | Master's (post-Bachelor) | Applied physiotherapy | Czech | full-time |
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| Third Faculty of Medicine | Bachelor's | Physiotherapy | Czech | full-time |
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| Third Faculty of Medicine | Bachelor's | General Nursing | Czech | full-time |
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| Third Faculty of Medicine | Bachelor's | Dental Hygiene | Czech | full-time |
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| Third Faculty of Medicine | Bachelor's | Nutritional Therapy | Czech | full-time |
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| Third Faculty of Medicine | doctoral | Molecular and Cellular Biology, Genetics and Virology | Czech | combined |
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| Third Faculty of Medicine | doctoral | Gynaecology, Obstetrics and Pediatrics | Czech | combined |
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| Third Faculty of Medicine | doctoral | Cell Biology and Pathology | Czech | combined |
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| Third Faculty of Medicine | doctoral | Experimental Surgery | Czech | combined |
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| Third Faculty of Medicine | doctoral | Immunology | Czech | combined |
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| Third Faculty of Medicine | doctoral | Preventive Medicine and Epidemiology | Czech | combined |
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| Third Faculty of Medicine | doctoral | Cardiovascular Science | Czech | combined |
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| Third Faculty of Medicine | doctoral | Dermatology | Czech | combined |
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| Third Faculty of Medicine | doctoral | Experimental intensive care medicine | Czech | combined |
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| Third Faculty of Medicine | doctoral | Human Physiology and Pathophysiology | Czech | combined |
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| Third Faculty of Medicine | doctoral | Neurosciences | Czech | combined |
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| Third Faculty of Medicine | doctoral | Biochemistry and Pathobiochemistry | Czech | combined |
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| Third Faculty of Medicine | doctoral | Orthopaedics | Czech | combined |
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| Third Faculty of Medicine | doctoral | Pharmacology and Toxicology | Czech | combined |
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| Third Faculty of Medicine | doctoral | Developmental and Cell Biology | Czech | combined |
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| Third Faculty of Medicine | doctoral | Anatomy, Histology and Embryology | Czech | combined |
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| Third Faculty of Medicine | doctoral | Nutritional and Metabolic Sciences | Czech | combined |
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| Third Faculty of Medicine | doctoral | Medical Biophysics | Czech | combined |
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| Third Faculty of Medicine | doctoral | Cardiovascular Science | English | combined |
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| Third Faculty of Medicine | doctoral | Immunology | English | combined |
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