velikost textu

Phylogenetic relationships within the Gobius-lineage (Gobiidae)

Upozornění: Informace získané z popisných dat či souborů uložených v Repozitáři závěrečných prací nemohou být použity k výdělečným účelům nebo vydávány za studijní, vědeckou nebo jinou tvůrčí činnost jiné osoby než autora.
Název:
Phylogenetic relationships within the Gobius-lineage (Gobiidae)
Název v češtině:
Fylogenetické vztahy mezi druhy hlaváčů linie Gobius (Gobiidae)
Typ:
Diplomová práce
Autor:
Bc. Tereza Slámová
Vedoucí:
RNDr. Jasna Vukićová, Ph.D.
Oponent:
Christelle Tougard, Dr.
Id práce:
172858
Fakulta:
Přírodovědecká fakulta (PřF)
Pracoviště:
Katedra ekologie (31-162)
Program studia:
Biologie (N1501)
Obor studia:
Ekologie (NEKO)
Přidělovaný titul:
Mgr.
Datum obhajoby:
12. 9. 2017
Výsledek obhajoby:
Velmi dobře
Informace o neveřejnosti:
Práce byla vyloučena ze zveřejnění.
Jazyk práce:
Angličtina
Klíčová slova:
evoluční vztahy, mořské ryby, hlaváči, multilokusový přístup, nukleární markery
Klíčová slova v angličtině:
evolutionary relationships, marine fishes, gobies, multilocus approach, nuclear markers
Abstrakt:
1 Supplement The content of the supplement: p. 1: Table 15: A list of species represented in this work and their description p. 4: Table 16: Mean genetic distances (p-distance) on cyt b within the Gobius-lineage (%) p. 5: Table 17: Mean genetic distances (p-distance) on COI within the Gobius-lineage (%) p. 6: Table 18: Mean genetic distances (p-distance) on Rh within the Gobius-lineage (%) p. 7: Table 19: Mean genetic distances (p-distance) on RAG within the Gobius-lineage (%) Table 15: A list of species represented in this work and their description Species Description Aphia minuta (Risso, 1810) Apogon imberbis (Linnaeus, 1758) Apogon maculatus (Poey, 1860) Babka gymnotrachelus (Kessler, 1857) Bathygobius soporator (Valenciennes, 1837) Benthophilus abdurahmanovi Ragimov, 1978 Benthophilus granulosus Kessler, 1877 Benthophilus mahmudbejovi Ragimov, 1976 Benthophilus stellatus (Sauvage, 1874) Bostrychus sinensis Lacepéde, 1871 Buenia affinis Iljin, 1930 Caspiosoma caspium (Kessler, 1877) cf Gnatholepis thompsoni Jordan, 1904 Corcyrogobius liechtensteini (Kolombatovic, 1891) Corcyrogobius lubbocki Miller, 1988 Coryogalops anomolus Smith, 1958 Crystallogobius linearis (Düben, 1854) Deltentosteus collonianus (Risso, 1820) Didogobius splechtnai Ahnelt&Patzner, 1995 Didogobius wirtzi Schlieven&Kovačić, 2008 Eleotris fusca (Forster, 1801) Gammogobius steinitzi Bath, 1971 Gnatholepis cauerensis (Bleeker, 1853) Gnatholepis thompsoni Jordan, 1904 Gobioides broussonnetii Lacepéde, 1800 Gobioides peruanus (Steindachner, 1880) Gobius ateriformis Brito&Miller, 2001 Gobius auratus Risso, 1810 1 Gobius bucchichi Steindachner, 1870 Gobius cobitis Pallas, 1814 Gobius couchi Miller&El-Tawil, 1974 Gobius cruentatus Gmelin, 1789 Gobius fallax Sarato, 1889 Gobius gasteveni Miller, 1974 Gobius geniporus Valenciennes, 1837 Gobius incognitus Kovačić&Šanda, 2016 Gobius kolombatovici Kovačić&Miller, 2000 Gobius niger Linnaeus, 1757 Gobius paganellus Linnaeus, 1758 Gobius roulei de Buen, 1928 Gobius tetropthalamus Brito&Miller, 2001 Gobius vittatus Vinciguerra, 1883 Gobius xanthocephalus Heymer&Zander, 1992 Gobiusculus flavescens (Fabricius, 1779) Gorogobius nigricinctus (Delais, 1951) Gymnogobius petschiliensis (Rendahl, 1924) Chromogobius britoi van Tassel, 2001 Chromogobius quadrivittatus (Steindachner, 1863) Chromogobius zebratus (Kolombatovic, 1891) Knipowitschia caucasica (Berg, 1916) Knipowitschia croatica Mrakovčić, Kerovec, Misetic & Schneider, 1996 Knipowitschia montenegrina Kovačić & Šanda, 2007 Knipowitschia mrakovcici Miller, 2009 Knipowitschia panizzae (Verga, 1841) Knipowitschia punctatissima (Canestrini, 1846) Knipowitschia radovici Kovačić, 2005 Lessueurigobius friesii (Malm, 1874) Lesuerigobius sanzi (de Buen, 1918) Mauligobius maderensis (Valenciennes, 1873) Mesogobius batrachhocephalus (Pallas, 1814) Micropercops swinhonis (Günther, 1873) Millerigobius macrocephalus (Kolombatovic, 1891) Neogobius caspius (Eichwald, 1831) Neogobius fluviatilis (Pallas, 1814) Neogobius melanostomus (Pallas, 1814) Neogobius pallasi (Berg, 1916) Odondebuenia balearica (Pellegrin & Fage, 1907) Odontobutis obscura (Temminck & Schlegel, 1845) Odontobutis potamophila (Günther, 1861) Oxyeleotris lineolata (Steindachner, 1867) Padogobius bonelii (Bonaparte, 1846) Padogobius nigricans (Canestrini, 1867) 2 Pomatoschistus bathi Miller, 1982 Pomatoschistus canestrini (Ninni, 1833) Pomatoschistus knerii (Steindachner, 1861) Pomatoschistus minutus (Pallas, 1770) Pomatoschistus pictus (Malm, 1865) Pomatoschistus quagga (Heckel, 1837) Pomatoschistus tortonesei Miller, 1969 Ponticola cephalargoides (Pinchuk, 1976) Ponticola constructor (Nordmann, 1840) Ponticola cyrius (Kessler, 1874) Ponticola eurycephalus (Kessler, 1874) Ponticola gorlap (Illjin, 1949) Ponticola kessleri (Günther, 1861) Ponticola platyrorstris (Pallas, 1814) Ponticola ratan (Nordmann, 1840) Ponticola rhodioni (Vasil`eva & Vasil`ev, 1994) Ponticola syrman (Nordmann, 1840) Proterorhinus marmoratus (Pallas, 1814) Proterorhinus semilunaris (Heckel, 1837) Proterorhinus semipellucidus (Kessler, 1863) Pseudoaphya ferreri (de Buen & Fage, 1908) Rhyacichthys aspro (Valenciennes, 1837) Speleogobius trygloides Zander & Jelinek, 1976 Sufflogobius bibarbatus (von Bonde, 1923) Thorogobius ephipiatus (Lowe, 1839) Thorogobius macrolepis (Kolombatovic, 1891) Vanneaugobius dollfusi Brownell, 1978 Vanneaugobius canariensis Van Tassel, Miller & Brito, 1988 Wheelerigobius wirtzi Miller, 1988 Zebrus zebrus (Risso, 1827) Zosterisessor ophiocephalus (Pallas, 1814) 3 4 5 Table 18: Mean genetic distances (p-distance) on Rh within the Gobius-lineage Neogobius_melanostomus Babka_gymnotrachelus 3% Proterorhinus_semilunaris 2% 2% Benthophilus_abdurahmanovi 3% 3% 3% Mesogobius_batrachocephalus 3% 2% 1% 4% Padogobius_bonelii 5% 6% 5% 6% 6% Gobius_paganellus 4% 5% 4% 4% 5% 3% Gobius_roulei 6% 6% 6% 6% 6% 5% 4% Gobius_kolombatovici 6% 6% 6% 6% 6% 5% 4% 2% Didogobius_splechtnai 6% 7% 6% 6% 7% 4% 4% 5% 5% Gammogobius_steinitzi 5% 6% 5% 5% 6% 3% 3% 4% 4% 2% Gobius_auratus 4% 6% 5% 5% 6% 4% 2% 3% 3% 4% 3% Gobius_incognitus 5% 5% 5% 5% 6% 4% 2% 3% 3% 4% 3% 1% Gobius_bucchichi 5% 5% 5% 5% 6% 4% 2% 3% 3% 4% 3% 1% 0.04% Gobius_couchi 4% 5% 5% 5% 6% 4% 2% 3% 3% 4% 3% 1% 1% 1% Gobius_cobitis 4% 5% 4% 4% 5% 3% 2% 4% 4% 5% 3% 3% 3% 3% 3% Gobius_cruentatus 5% 5% 5% 5% 5% 4% 2% 3% 3% 4% 3% 2% 2% 2% 2% 3% Gobius_falax 5% 6% 6% 5% 6% 4% 3% 3% 3% 4% 3% 0% 1% 1% 1% 3% 2% Gobius_geniporus 5% 5% 5% 5% 5% 3% 2% 2% 2% 4% 3% 1% 1% 1% 1% 3% 1% 1% Gobius_niger 5% 6% 6% 6% 6% 5% 3% 2% 3% 5% 4% 3% 3% 3% 3% 4% 3% 3% 2% Gobius_vittatus 5% 6% 5% 5% 6% 4% 3% 3% 3% 4% 3% 0.3% 1% 1% 1% 3% 2% 0.3% 1% 3% Chromogobius_quadrivittatus 6% 6% 6% 6% 6% 3% 3% 5% 5% 2% 2% 3% 3% 3% 3% 4% 4% 3% 3% 5% 3% Chromogobius_zebratus 6% 7% 6% 6% 7% 4% 3% 5% 4% 2% 2% 3% 3% 3% 3% 4% 3% 3% 3% 4% 3% 1% Chromogobius_sp. 6% 7% 7% 7% 7% 4% 4% 5% 4% 2% 2% 3% 4% 4% 4% 5% 3% 3% 3% 5% 4% 1% 1% Chromogobius_britoi 5% 6% 6% 6% 6% 3% 3% 4% 4% 1% 1% 3% 3% 3% 3% 4% 3% 3% 3% 4% 3% 1% 1% 1% Odondebuenia_balearica 9% 10% 9% 10% 10% 7% 8% 7% 8% 6% 6% 7% 7% 7% 7% 8% 7% 7% 6% 7% 7% 6% 6% 6% 6% Thorogobius_macrolepis 6% 7% 7% 6% 7% 6% 5% 5% 5% 6% 5% 4% 5% 5% 4% 5% 5% 4% 5% 5% 4% 6% 6% 6% 5% 9% Thorogobius_ephippiatus 6% 7% 7% 6% 6% 6% 5% 5% 5% 6% 5% 4% 5% 5% 4% 5% 5% 4% 5% 5% 4% 5% 6% 6% 5% 9% 1% Zebrus_zebrus 8% 8% 8% 8% 8% 6% 5% 6% 6% 7% 5% 5% 4% 5% 5% 5% 5% 5% 5% 6% 5% 5% 5% 6% 5% 8% 7% 7% Zosterisessor_ophiocephalus 5% 5% 5% 5% 5% 4% 2% 3% 3% 4% 3% 1% 0% 0% 0% 3% 2% 1% 1% 2% 1% 3% 3% 4% 3% 7% 5% 5% 4% Millerigobius_macrocephalus 7% 7% 7% 7% 8% 6% 5% 6% 6% 6% 5% 4% 4% 4% 4% 5% 5% 5% 4% 6% 5% 5% 5% 6% 5% 8% 7% 7% 1% 4% Corcyrogobius_liechtensteinii 5% 6% 6% 6% 6% 3% 3% 5% 5% 2% 1% 3% 4% 4% 4% 4% 4% 3% 3% 5% 3% 2% 2% 2% 1% 6% 5% 5% 5% 3% 5% Gobius_xanthocephalus 4% 5% 5% 5% 6% 4% 3% 3% 3% 4% 3% 0% 1% 1% 1% 3% 2% 1% 1% 3% 1% 4% 3% 4% 3% 7% 5% 5% 5% 1% 4% 4% Mauligobius_maderensis 4% 5% 4% 4% 5% 4% 2% 4% 4% 4% 3% 3% 2% 2% 2% 1% 3% 3% 2% 4% 3% 4% 4% 5% 3% 8% 5% 4% 5% 2% 5% 4% 3% Vanneaugobus_dollfusi 4% 5% 5% 5% 5% 3% 3% 4% 4% 2% 2% 2% 2% 2% 2% 3% 3% 2% 2% 4% 2% 3% 3% 3% 2% 6% 2% 3% 5% 2% 4% 2% 2% 3% Coryogalops_anomolus 8% 8% 8% 9% 9% 6% 7% 8% 8% 7% 6% 6% 6% 7% 6% 7% 7% 6% 6% 8% 6% 6% 6% 6% 6% 9% 8% 8% 6% 6% 6% 7% 7% 6% 6% 6 7 8
Abstract v angličtině:
Abstract Gobiidae is one of the largest families of teleost fishes with nearly 2000 species currently recognized. They have a worldwide distribution with exception of Arctic and Antarctic areas, inhabiting marine, brackish and freshwaters. Mostly, they are small–sized and live inconspicuously on the bottom. Their phylogeny has been studied only partially. In Europe, three independent lineages of gobies exist (Gobius-, Aphia- and Pomatoschistus-lineage), most of the species of these lineages are marine. In this work, I performed a multilocus study of the Gobius–lineage encompassing the majority of the species. Mitochondrial (cytochrome b and cytochrome c oxidase I) as well as nuclear (rhodopsin and recombination activating gene) markers were used. 480 individuals of 30 species were analyzed in the laboratory and sequences of further 25 - 32 species were downloaded from the Genbank and added to a dataset of each marker according to availability. Mitochondrial markers were more informative than the nuclear ones. The usefulness of cytochrome c oxidase I for studying phylogenetic relationships of gobies was compared with cytochrome b. Cytochrome c oxidase I showed to be useful for identification of the species, but has some limitations in resolving deeper phylogenetic relationships in gobies. Cytochrome b showed to be more suitable for complex phylogenetical studies. The results show that the genus Gobius is not monophyletic. It is divided into two, well-supported groups, of which one is a sister group to Ponto-Caspian gobies. One of the groups includes also Zosterisessor ophiocephalus, while in the other one Mauligobius maderensis is included. Genus Vanneaugobius is polyphyletic, as Vanneaugobius canariens and Vanneaugobius dollfusi do not cluster together. One of the species clustered with Wheelerigobius wirtzi and the other with Odondebuenia balearica. A revision of this genus is necessary, as well. The results further showed that the gobies identified as Gobius kolombatovici from the west Mediterranean populations (published data) are not related to the populations of this species from its type locality in northern Adriatic and in fact belong to an unknown species, which is related to Gobius gasteveni. An unknown species of the genus Chromogobius was revealed and confirmed by all molecular markers. It was shown that two species currently assigned to the genus Padogobius are not related to each other, one of the species (Padogobius nigricans) falls within Neogobius species. A switch to freshwaters occurred twice in the evolution of the Gobius-lineage, while the cryptobenthic way of life evolved at least six times in this lineage. Key words: evolutionary relationships, marine fishes, gobies, multilocus approach, nuclear markers, adaptation
Dokumenty
Stáhnout Dokument Autor Typ Velikost
Stáhnout Text práce Bc. Tereza Slámová 2.59 MB
Stáhnout Příloha k práci Bc. Tereza Slámová 1.26 MB
Stáhnout Abstrakt v českém jazyce Bc. Tereza Slámová 1.14 MB
Stáhnout Abstrakt anglicky Bc. Tereza Slámová 456 kB
Stáhnout Posudek vedoucího RNDr. Jasna Vukićová, Ph.D. 129 kB
Stáhnout Posudek oponenta Christelle Tougard, Dr. 442 kB
Stáhnout Záznam o průběhu obhajoby doc. RNDr. Adam Petrusek, Ph.D. 152 kB